Let`s Encrypt certificate update not carried out or transferred correctly

What @Walter_Palumbo posted isn’t only a nextcloud problem. Please try the following steps from the side Walter posted:

Then after reading this thread and a few other things on the net, I first made a copy of the /etc/letsencrypt folder and then tried a few things.
What finally got it working for me was to copy the .pem files from the mycoolsite.org-0001 folder to the mycoolsite.org one:

Also have a look here: